BioinformaticsIntermediate
Sequencing Data QC and Reporting
For FASTQ sequencing data: organise raw data, check quality, filter, prepare for alignment and summarise everything in a MultiQC report.
FastQCMultiQC
2–6 hours 5 stepsView workflow
Open-source bioinformatics report aggregator that combines results from FastQC and many other tools.
MultiQC is an open-source report aggregation tool that scans the output of multiple bioinformatics programs and generates a single HTML report. It is often used to summarise results from FastQC, STAR, Bowtie2, BWA, SAMtools and others.
Use cases: QC report aggregation, NGS pipelines, bioinformatics reports, multi-sample analysis, HTML reports
Note: MultiQC does not replace the individual analysis tools; it is mainly for summarising and checking results.