BioinformaticsIntermediate
Sequencing Data QC and Reporting
For FASTQ sequencing data: organise raw data, check quality, filter, prepare for alignment and summarise everything in a MultiQC report.
FastQCMultiQC
2–6 hours 5 stepsView workflow
Free, open-source sequencing QC tool for checking FASTQ quality and generating reports.
FastQC is a widely used quality control tool for sequencing data that checks FASTQ files for base quality, GC content, adapter contamination, duplicated sequences and more, and produces a QC report. It suits basic quality checks before NGS analysis.
Use cases: sequencing QC, FASTQ, NGS, quality reports, bioinformatics
Note: for multi-sample projects, summarise reports with MultiQC.