IGV

Free, open-source genome browser for viewing sequencing alignments, variants and genome annotations.

Details

IGV (Integrative Genomics Viewer) is a free, open-source genome browser for viewing BAM, VCF, BED, GFF and other genomic data, suited to visualising sequencing alignments, variant sites, gene annotations and omics data.

Use cases: genome browsing, sequencing alignment, variant viewing, BAM/VCF, gene annotation

Note: IGV is a viewing and checking tool; it does not replace variant calling or statistical analysis pipelines.