Open-source microbiome data analysis platform for amplicon sequencing and community analysis.
QIIME 2 is an open-source microbiome bioinformatics platform commonly used for 16S and amplicon sequencing, microbial community composition, diversity analysis and reproducible workflow management. It suits ecological, medical, agricultural and environmental microbiome research.
Use cases: microbiome analysis, 16S amplicons, diversity analysis, community structure, reproducible workflows
Note: QIIME 2 requires some command-line and bioinformatics background; beginners are advised to follow the official tutorials.
