VMD

Free molecular visualisation and analysis tool for viewing molecular dynamics trajectories, protein structures and simulation results.

Details

VMD is a widely used molecular visualisation and analysis tool for viewing proteins, nucleic acids, lipid membranes, molecular dynamics trajectories and simulation systems. It suits structural biology, molecular simulation, materials simulation and presenting molecular dynamics results.

Use cases: molecular dynamics, protein structure, trajectory analysis, molecular visualisation, simulation results

Note: VMD is free to use, but its licence terms differ from typical open-source software, so it is best labelled as a free academic tool.